IL_6OGI_146

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

6OGI|1|3|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_146 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1907

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6OGI|1|3|G|925
6OGI|1|3|G|926
6OGI|1|3|G|927
6OGI|1|3|G|928
*
6OGI|1|3|C|1389
6OGI|1|3|U|1390
6OGI|1|3|U|1391

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain J

30S ribosomal protein S5

Chain Z

30S ribosomal protein S21