IL_6OGI_147

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_147 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2624

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6OGI|1|3|U|952
6OGI|1|3|G|953
6OGI|1|3|G|954
*
6OGI|1|3|C|1226
6OGI|1|3|A|1227
6OGI|1|3|C|1228
6OGI|1|3|A|1229

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19