IL_6OGI_158

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6OGI|1|3|C|1400, 6OGI|1|3|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_158 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.192

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6OGI|1|3|C|1399
6OGI|1|3|C|1400
6OGI|1|3|G|1401
*
6OGI|1|3|C|1501
6OGI|1|3|A|1502
6OGI|1|3|A|1503
6OGI|1|3|G|1504

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA