IL_6OGI_190

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CGCGGUAAUACGGAGG

Length

18 nucleotides

Bulged bases

6OGI|1|3|G|530, 6OGI|1|3|U|531, 6OGI|1|3|A|532, 6OGI|1|3|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|C|504
6OGI|1|3|G|505
*
6OGI|1|3|C|526
6OGI|1|3|G|527
6OGI|1|3|C|528
6OGI|1|3|G|529
6OGI|1|3|G|530
6OGI|1|3|U|531
6OGI|1|3|A|532
6OGI|1|3|A|533
6OGI|1|3|U|534
6OGI|1|3|A|535
6OGI|1|3|C|536
6OGI|1|3|G|537
6OGI|1|3|G|538
6OGI|1|3|A|539
6OGI|1|3|G|540
6OGI|1|3|G|541

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain H

30S ribosomal protein S3

Chain I

30S ribosomal protein S4

Chain Q

30S ribosomal protein S12