IL_6OGI_205

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_205 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.3559

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|U|1864
6OGI|1|1|U|1865
6OGI|1|1|A|1866
6OGI|1|1|G|1867
*
6OGI|1|1|C|1874
6OGI|1|1|G|1875
6OGI|1|1|A|1876
6OGI|1|1|A|1877
6OGI|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains