IL_6OIG_014
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6OIG|1|5|A|398, 6OIG|1|5|A|402
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OIG_014 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.2253
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6OIG|1|5|G|376
6OIG|1|5|A|377
6OIG|1|5|A|378
6OIG|1|5|C|379
*
6OIG|1|5|G|390
6OIG|1|5|A|391
6OIG|1|5|G|392
6OIG|1|5|U|393
6OIG|1|5|G|394
6OIG|1|5|A|395
6OIG|1|5|A|396
6OIG|1|5|A|397
6OIG|1|5|A|398
6OIG|1|5|A|399
6OIG|1|5|G|400
6OIG|1|5|U|401
6OIG|1|5|A|402
6OIG|1|5|C|403
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: