IL_6OIG_015

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAAU*ACGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_015 not in the Motif Atlas

Homologous match to IL_5TBW_015

Geometric discrepancy: 0.2198

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|G|404
6OIG|1|5|U|405
6OIG|1|5|G|406
6OIG|1|5|A|407
6OIG|1|5|A|408
6OIG|1|5|A|409
6OIG|1|5|U|410
*
6OIG|1|8|A|13
6OIG|1|8|C|14
6OIG|1|8|G|15
6OIG|1|8|G|16
6OIG|1|8|A|17
6OIG|1|8|U|18
6OIG|1|8|C|19

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain e

60S ribosomal protein L32