IL_6OIG_026

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_026 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.3129

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OIG|1|5|C|758
6OIG|1|5|U|759
6OIG|1|5|G|760
6OIG|1|5|A|761
6OIG|1|5|U|762
6OIG|1|5|G|763
*
6OIG|1|5|C|768
6OIG|1|5|G|769
6OIG|1|5|G|770
6OIG|1|5|A|771
6OIG|1|5|U|772
6OIG|1|5|G|773

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain o

60S ribosomal protein L42-A