IL_6OIG_029
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAGC*GUGGAGGC
- Length
- 15 nucleotides
- Bulged bases
- 6OIG|1|5|G|860
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OIG_029 not in the Motif Atlas
- Geometric match to IL_7RQB_001
- Geometric discrepancy: 0.2797
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OIG|1|5|G|833
6OIG|1|5|U|834
6OIG|1|5|G|835
6OIG|1|5|A|836
6OIG|1|5|A|837
6OIG|1|5|G|838
6OIG|1|5|C|839
*
6OIG|1|5|G|854
6OIG|1|5|U|855
6OIG|1|5|G|856
6OIG|1|5|G|857
6OIG|1|5|A|858
6OIG|1|5|G|859
6OIG|1|5|G|860
6OIG|1|5|C|861
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain p
- 60S ribosomal protein L43-A
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