IL_6OIG_053

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_053 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.3778

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OIG|1|5|C|1228
6OIG|1|5|G|1229
6OIG|1|5|G|1230
*
6OIG|1|5|C|1280
6OIG|1|5|G|1281

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain q

60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE

Chain s

60S ribosomal protein L12-A