IL_6OIG_054

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6OIG|1|5|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_054 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5642

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6OIG|1|5|G|1234
6OIG|1|5|U|1235
6OIG|1|5|G|1236
6OIG|1|5|G|1237
6OIG|1|5|C|1238
*
6OIG|1|5|G|1250
6OIG|1|5|A|1251
6OIG|1|5|A|1252
6OIG|1|5|U|1253
6OIG|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain q

60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE

Chain s

60S ribosomal protein L12-A