IL_6OIG_068

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_068 not in the Motif Atlas

Geometric match to IL_4YAZ_006

Geometric discrepancy: 0.3603

The information below is about IL_4YAZ_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6OIG|1|5|U|1645
6OIG|1|5|G|1646
6OIG|1|5|A|1647
6OIG|1|5|A|1648
6OIG|1|5|U|1649
*
6OIG|1|5|A|1806
6OIG|1|5|G|1807
6OIG|1|5|G|1808
6OIG|1|5|A|1809
6OIG|1|5|A|1810

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A