IL_6OIG_084

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6OIG|1|5|A|2242, 6OIG|1|5|A|2243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_084 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2342

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6OIG|1|5|U|2200
6OIG|1|5|G|2201
6OIG|1|5|C|2202
*
6OIG|1|5|G|2240
6OIG|1|5|U|2241
6OIG|1|5|A|2242
6OIG|1|5|A|2243
6OIG|1|5|A|2244

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A