IL_6OIG_090

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6OIG|1|5|A|2397, 6OIG|1|5|C|2983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_090 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.2356

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OIG|1|5|G|2396
6OIG|1|5|A|2397
6OIG|1|5|A|2398
*
6OIG|1|5|U|2981
6OIG|1|5|A|2982
6OIG|1|5|C|2983
6OIG|1|5|C|2984

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A