IL_6OIG_093

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6OIG|1|5|G|2606

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_093 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.2012

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6OIG|1|5|U|2423
6OIG|1|5|A|2424
6OIG|1|5|G|2425
*
6OIG|1|5|U|2604
6OIG|1|5|G|2605
6OIG|1|5|G|2606
6OIG|1|5|G|2607

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A

Chain o

60S ribosomal protein L42-A