IL_6OIG_094

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGACAUAGAG*CUUUAUAGUUU

Length

21 nucleotides

Bulged bases

6OIG|1|5|U|2498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|A|2441
6OIG|1|5|G|2442
6OIG|1|5|A|2443
6OIG|1|5|C|2444
6OIG|1|5|A|2445
6OIG|1|5|U|2446
6OIG|1|5|A|2447
6OIG|1|5|G|2448
6OIG|1|5|A|2449
6OIG|1|5|G|2450
*
6OIG|1|5|C|2496
6OIG|1|5|U|2497
6OIG|1|5|U|2498
6OIG|1|5|U|2499
6OIG|1|5|A|2500
6OIG|1|5|U|2501
6OIG|1|5|A|2502
6OIG|1|5|G|2503
6OIG|1|5|U|2504
6OIG|1|5|U|2505
6OIG|1|5|U|2506

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain i

60S ribosomal protein L36-A

Chain z

60S ribosomal protein L1-A