IL_6OIG_095

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUACC

Length

41 nucleotides

Bulged bases

6OIG|1|5|U|2453, 6OIG|1|5|A|2458, 6OIG|1|5|U|2460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|G|2450
6OIG|1|5|G|2451
6OIG|1|5|G|2452
6OIG|1|5|U|2453
6OIG|1|5|G|2454
6OIG|1|5|U|2455
6OIG|1|5|A|2456
6OIG|1|5|G|2457
6OIG|1|5|A|2458
6OIG|1|5|A|2459
6OIG|1|5|U|2460
6OIG|1|5|A|2461
6OIG|1|5|A|2462
6OIG|1|5|G|2463
6OIG|1|5|U|2464
6OIG|1|5|G|2465
6OIG|1|5|G|2466
6OIG|1|5|G|2467
6OIG|1|5|A|2468
6OIG|1|5|G|2469
*
6OIG|1|5|C|2476
6OIG|1|5|G|2477
6OIG|1|5|C|2478
6OIG|1|5|C|2479
6OIG|1|5|A|2480
6OIG|1|5|G|2481
6OIG|1|5|U|2482
6OIG|1|5|G|2483
6OIG|1|5|A|2484
6OIG|1|5|A|2485
6OIG|1|5|A|2486
6OIG|1|5|U|2487
6OIG|1|5|A|2488
6OIG|1|5|C|2489
6OIG|1|5|C|2490
6OIG|1|5|A|2491
6OIG|1|5|C|2492
6OIG|1|5|U|2493
6OIG|1|5|A|2494
6OIG|1|5|C|2495
6OIG|1|5|C|2496

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L1-A