IL_6OIG_097

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_097 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.17

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6OIG|1|5|G|2614
6OIG|1|5|G|2615
*
6OIG|1|5|C|2625
6OIG|1|5|A|2626
6OIG|1|5|C|2627

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L29