IL_6OIG_138

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_138 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1912

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

6OIG|1|7|U|32
6OIG|1|7|U|33
6OIG|1|7|C|34
6OIG|1|7|C|35
6OIG|1|7|C|36
*
6OIG|1|7|G|41
6OIG|1|7|A|42
6OIG|1|7|U|43
6OIG|1|7|C|44
6OIG|1|7|A|45

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-B