IL_6OIG_144
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- 6OIG|1|5|A|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OIG_144 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.3131
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
6OIG|1|5|U|32
6OIG|1|5|G|33
6OIG|1|5|A|34
6OIG|1|5|A|35
6OIG|1|5|C|36
6OIG|1|5|U|37
6OIG|1|5|U|38
*
6OIG|1|5|A|45
6OIG|1|5|U|46
6OIG|1|5|C|47
6OIG|1|5|A|48
6OIG|1|5|A|49
6OIG|1|5|U|50
6OIG|1|5|A|51
6OIG|1|5|A|52
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L37-A
- Chain o
- 60S ribosomal protein L42-A
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