IL_6OIG_147

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6OIG|1|5|U|534, 6OIG|1|5|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_147 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.2721

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6OIG|1|5|G|531
6OIG|1|5|A|532
6OIG|1|5|A|533
6OIG|1|5|U|534
6OIG|1|5|G|535
6OIG|1|5|U|536
6OIG|1|5|A|537
6OIG|1|5|G|538
*
6OIG|1|5|U|553
6OIG|1|5|A|554
6OIG|1|5|U|555
6OIG|1|5|U|556
6OIG|1|5|A|557
6OIG|1|5|U|558
6OIG|1|5|A|559
6OIG|1|5|G|560
6OIG|1|5|C|561

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A