Loop IL_6OIG

3D structure

PDB id: 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Subunit joining exposes nascent pre-40S rRNA for processing and quality control
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: AGACAUAGAGGGUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUACCUUUAUAGUUU
Length: 60 nucleotides
Bulged bases: 6OIG|1|5|U|2453, 6OIG|1|5|A|2458, 6OIG|1|5|U|2460, 6OIG|1|5|C|2489, 6OIG|1|5|U|2498, 6OIG|1|5|A|2502
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OIG|1|5|A|2441
6OIG|1|5|G|2442
6OIG|1|5|A|2443
6OIG|1|5|C|2444
6OIG|1|5|A|2445
6OIG|1|5|U|2446
6OIG|1|5|A|2447
6OIG|1|5|G|2448
6OIG|1|5|A|2449
6OIG|1|5|G|2450
6OIG|1|5|G|2451
6OIG|1|5|G|2452
6OIG|1|5|U|2453
6OIG|1|5|G|2454
6OIG|1|5|U|2455
6OIG|1|5|A|2456
6OIG|1|5|G|2457
6OIG|1|5|A|2458
6OIG|1|5|A|2459
6OIG|1|5|U|2460
6OIG|1|5|A|2461
6OIG|1|5|A|2462
6OIG|1|5|G|2463
6OIG|1|5|U|2464
6OIG|1|5|G|2465
6OIG|1|5|G|2466
6OIG|1|5|G|2467
6OIG|1|5|A|2468
6OIG|1|5|G|2469
*
6OIG|1|5|C|2476
6OIG|1|5|G|2477
6OIG|1|5|C|2478
6OIG|1|5|C|2479
6OIG|1|5|A|2480
6OIG|1|5|G|2481
6OIG|1|5|U|2482
6OIG|1|5|G|2483
6OIG|1|5|A|2484
6OIG|1|5|A|2485
6OIG|1|5|A|2486
6OIG|1|5|U|2487
6OIG|1|5|A|2488
6OIG|1|5|C|2489
6OIG|1|5|C|2490
6OIG|1|5|A|2491
6OIG|1|5|C|2492
6OIG|1|5|U|2493
6OIG|1|5|A|2494
6OIG|1|5|C|2495
6OIG|1|5|C|2496
6OIG|1|5|U|2497
6OIG|1|5|U|2498
6OIG|1|5|U|2499
6OIG|1|5|A|2500
6OIG|1|5|U|2501
6OIG|1|5|A|2502
6OIG|1|5|G|2503
6OIG|1|5|U|2504
6OIG|1|5|U|2505
6OIG|1|5|U|2506

Current chains

Chain 5: 25S ribosomal RNA

Nearby chains

Chain i: 60S ribosomal protein L36-A
Chain z: 60S ribosomal protein L1-A

IL_6OIG_156