IL_6OIG_157

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGAAGC*GGGUU

Length

13 nucleotides

Bulged bases

6OIG|1|5|G|2522, 6OIG|1|5|G|2585, 6OIG|1|5|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|A|2519
6OIG|1|5|A|2520
6OIG|1|5|U|2521
6OIG|1|5|G|2522
6OIG|1|5|A|2523
6OIG|1|5|A|2524
6OIG|1|5|G|2525
6OIG|1|5|C|2526
*
6OIG|1|5|G|2584
6OIG|1|5|G|2585
6OIG|1|5|G|2586
6OIG|1|5|U|2587
6OIG|1|5|U|2588

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain X

60S ribosomal protein L25