IL_6OIG_169

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAACGGUG*UGCUUG

Length

14 nucleotides

Bulged bases

6OIG|1|5|U|3259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|C|3225
6OIG|1|5|A|3226
6OIG|1|5|A|3227
6OIG|1|5|C|3228
6OIG|1|5|G|3229
6OIG|1|5|G|3230
6OIG|1|5|U|3231
6OIG|1|5|G|3232
*
6OIG|1|5|U|3255
6OIG|1|5|G|3256
6OIG|1|5|C|3257
6OIG|1|5|U|3258
6OIG|1|5|U|3259
6OIG|1|5|G|3260

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L33-A