IL_6OJ2_007

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6OJ2|1|QA|G|129|||A, 6OJ2|1|QA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6OJ2|1|QA|U|129
6OJ2|1|QA|G|129|||A
6OJ2|1|QA|A|130
6OJ2|1|QA|C|131
*
6OJ2|1|QA|G|231
6OJ2|1|QA|G|232

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20