3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGGCCAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_020 not in the Motif Atlas
Homologous match to IL_4LFB_020
Geometric discrepancy: 0.0872
The information below is about IL_4LFB_020
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

6OJ2|1|QA|C|504
6OJ2|1|QA|G|505
6OJ2|1|QA|G|506
6OJ2|1|QA|C|507
6OJ2|1|QA|C|508
6OJ2|1|QA|A|509
6OJ2|1|QA|A|510
6OJ2|1|QA|C|511
*
6OJ2|1|QA|G|540
6OJ2|1|QA|G|541

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QE
30S ribosomal protein S5
Chain QL
30S ribosomal protein S12

Coloring options:


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