IL_6OJ2_049

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6OJ2|1|QA|C|1400, 6OJ2|1|QA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_049 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2182

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6OJ2|1|QA|C|1399
6OJ2|1|QA|C|1400
6OJ2|1|QA|G|1401
*
6OJ2|1|QA|C|1501
6OJ2|1|QA|A|1502
6OJ2|1|QA|A|1503
6OJ2|1|QA|G|1504

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

mRNA