IL_6OJ2_050

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_050 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1549

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OJ2|1|QA|G|1401
6OJ2|1|QA|C|1402
6OJ2|1|QA|C|1403
6OJ2|1|QA|C|1404
*
6OJ2|1|QA|G|1497
6OJ2|1|QA|U|1498
6OJ2|1|QA|A|1499
6OJ2|1|QA|A|1500
6OJ2|1|QA|C|1501

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

mRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA