3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGGGAG*CAG
Length
9 nucleotides
Bulged bases
6OJ2|1|QA|G|1443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_057 not in the Motif Atlas
Homologous match to IL_4LFB_064
Geometric discrepancy: 0.2132
The information below is about IL_4LFB_064
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49061.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
6

Unit IDs

6OJ2|1|QA|C|1440
6OJ2|1|QA|G|1441
6OJ2|1|QA|G|1442
6OJ2|1|QA|G|1443
6OJ2|1|QA|A|1446
6OJ2|1|QA|G|1447
*
6OJ2|1|QA|C|1459
6OJ2|1|QA|A|1460
6OJ2|1|QA|G|1461

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QT
30S ribosomal protein S20
Chain RA
Large subunit ribosomal RNA; LSU rRNA
Chain RT
50S ribosomal protein L19

Coloring options:


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