3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_084 not in the Motif Atlas
Homologous match to IL_7RQB_027
Geometric discrepancy: 0.2477
The information below is about IL_7RQB_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.1
Basepair signature
cWW-L-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6OJ2|1|RA|U|858
6OJ2|1|RA|G|859
6OJ2|1|RA|U|860
6OJ2|1|RA|A|861
6OJ2|1|RA|G|862
*
6OJ2|1|RA|C|915
6OJ2|1|RA|G|916
6OJ2|1|RA|A|917
6OJ2|1|RA|A|918
6OJ2|1|RA|G|919

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R3
50S ribosomal protein L30
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

Coloring options:


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