3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
6OJ2|1|RA|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_097 not in the Motif Atlas
Homologous match to IL_4WF9_041
Geometric discrepancy: 0.1122
The information below is about IL_4WF9_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

6OJ2|1|RA|G|1031
6OJ2|1|RA|A|1032
6OJ2|1|RA|U|1033
6OJ2|1|RA|G|1034
*
6OJ2|1|RA|C|1121
6OJ2|1|RA|G|1122
6OJ2|1|RA|C|1123

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R9
50S ribosomal protein L36
Chain RH
50S ribosomal protein L6
Chain RQ
50S ribosomal protein L16

Coloring options:


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