3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCAAU*AGC
Length
8 nucleotides
Bulged bases
6OJ2|1|RA|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_106 not in the Motif Atlas
Homologous match to IL_7RQB_051
Geometric discrepancy: 0.1036
The information below is about IL_7RQB_051
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

6OJ2|1|RA|G|1319
6OJ2|1|RA|C|1320
6OJ2|1|RA|A|1321
6OJ2|1|RA|A|1322
6OJ2|1|RA|U|1323
*
6OJ2|1|RA|A|1331
6OJ2|1|RA|G|1332
6OJ2|1|RA|C|1333

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RW
50S ribosomal protein L22
Chain RX
50S ribosomal protein L23

Coloring options:


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