IL_6OJ2_130

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_130 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1218

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6OJ2|1|RA|G|1856
6OJ2|1|RA|G|1857
6OJ2|1|RA|G|1858
6OJ2|1|RA|A|1859
6OJ2|1|RA|G|1860
*
6OJ2|1|RA|C|1882
6OJ2|1|RA|G|1883
6OJ2|1|RA|A|1884
6OJ2|1|RA|A|1885
6OJ2|1|RA|C|1886

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28