3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
ACGA*UCUAU
Length
9 nucleotides
Bulged bases
6OJ2|1|RA|C|2055, 6OJ2|1|RA|C|2612, 6OJ2|1|RA|U|2613, 6OJ2|1|RA|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_134 not in the Motif Atlas
Homologous match to IL_7RQB_079
Geometric discrepancy: 0.1068
The information below is about IL_7RQB_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01206.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

6OJ2|1|RA|A|2054
6OJ2|1|RA|C|2055
6OJ2|1|RA|G|2056
6OJ2|1|RA|A|2057
*
6OJ2|1|RA|U|2611
6OJ2|1|RA|C|2612
6OJ2|1|RA|U|2613
6OJ2|1|RA|A|2614
6OJ2|1|RA|U|2615

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RW
50S ribosomal protein L22

Coloring options:


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