3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCUG*CUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_139 not in the Motif Atlas
Geometric match to IL_1D4R_001
Geometric discrepancy: 0.2573
The information below is about IL_1D4R_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6OJ2|1|RA|C|2107
6OJ2|1|RA|C|2108
6OJ2|1|RA|U|2109
6OJ2|1|RA|G|2110
*
6OJ2|1|RA|C|2179
6OJ2|1|RA|U|2180
6OJ2|1|RA|G|2181
6OJ2|1|RA|G|2182

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QW
Transfer RNA; tRNA

Coloring options:


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