IL_6OJ2_139

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_139 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2573

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OJ2|1|RA|C|2107
6OJ2|1|RA|C|2108
6OJ2|1|RA|U|2109
6OJ2|1|RA|G|2110
*
6OJ2|1|RA|C|2179
6OJ2|1|RA|U|2180
6OJ2|1|RA|G|2181
6OJ2|1|RA|G|2182

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA