3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6OJ2|1|RA|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_156 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.1011
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6OJ2|1|RA|U|2636
6OJ2|1|RA|U|2637
6OJ2|1|RA|G|2638
6OJ2|1|RA|A|2639
6OJ2|1|RA|G|2640
*
6OJ2|1|RA|C|2774
6OJ2|1|RA|A|2775
6OJ2|1|RA|A|2776
6OJ2|1|RA|G|2777
6OJ2|1|RA|A|2778
6OJ2|1|RA|U|2779
6OJ2|1|RA|G|2780
6OJ2|1|RA|A|2781
6OJ2|1|RA|G|2782

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13

Coloring options:


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