IL_6OJ2_161

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6OJ2|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_161 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.111

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OJ2|1|RA|G|2737
6OJ2|1|RA|A|2738
6OJ2|1|RA|U|2739
6OJ2|1|RA|A|2740
6OJ2|1|RA|A|2741
6OJ2|1|RA|C|2742
*
6OJ2|1|RA|G|2762
6OJ2|1|RA|G|2763
6OJ2|1|RA|A|2764
6OJ2|1|RA|A|2765
6OJ2|1|RA|G|2766
6OJ2|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13