3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6OJ2|1|XA|U|244, 6OJ2|1|XA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_180 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.097
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6OJ2|1|XA|C|242
6OJ2|1|XA|A|243
6OJ2|1|XA|U|244
6OJ2|1|XA|C|245
6OJ2|1|XA|A|246
6OJ2|1|XA|G|247
*
6OJ2|1|XA|C|277
6OJ2|1|XA|G|278
6OJ2|1|XA|A|279
6OJ2|1|XA|C|280
6OJ2|1|XA|G|281
6OJ2|1|XA|A|282
6OJ2|1|XA|C|283
6OJ2|1|XA|G|284

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XQ
30S ribosomal protein S17

Coloring options:


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