IL_6OJ2_180

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6OJ2|1|XA|U|244, 6OJ2|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_180 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.097

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6OJ2|1|XA|C|242
6OJ2|1|XA|A|243
6OJ2|1|XA|U|244
6OJ2|1|XA|C|245
6OJ2|1|XA|A|246
6OJ2|1|XA|G|247
*
6OJ2|1|XA|C|277
6OJ2|1|XA|G|278
6OJ2|1|XA|A|279
6OJ2|1|XA|C|280
6OJ2|1|XA|G|281
6OJ2|1|XA|A|282
6OJ2|1|XA|C|283
6OJ2|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17