3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_199 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.0777
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6OJ2|1|XA|G|673
6OJ2|1|XA|G|674
6OJ2|1|XA|A|675
6OJ2|1|XA|A|676
6OJ2|1|XA|U|677
6OJ2|1|XA|U|678
*
6OJ2|1|XA|A|712
6OJ2|1|XA|G|713
6OJ2|1|XA|G|714
6OJ2|1|XA|A|715
6OJ2|1|XA|A|716
6OJ2|1|XA|C|717

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XF
30S ribosomal protein S6
Chain XK
30S ribosomal protein S11
Chain XR
30S ribosomal protein S18
Chain YD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.137 s