IL_6OJ2_202

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_202 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.0795

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6OJ2|1|XA|C|779
6OJ2|1|XA|A|780
6OJ2|1|XA|A|781
6OJ2|1|XA|A|782
6OJ2|1|XA|C|783
*
6OJ2|1|XA|G|799
6OJ2|1|XA|G|800
6OJ2|1|XA|U|801
6OJ2|1|XA|A|802
6OJ2|1|XA|G|803

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA