IL_6OJ2_254

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_254 not in the Motif Atlas

Homologous match to IL_4WF9_032

Geometric discrepancy: 0.1002

The information below is about IL_4WF9_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6OJ2|1|YA|G|862
6OJ2|1|YA|A|863
*
6OJ2|1|YA|U|913
6OJ2|1|YA|C|914
6OJ2|1|YA|C|915

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25