IL_6OJ2_282

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6OJ2|1|YA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_282 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0963

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OJ2|1|YA|C|1437
6OJ2|1|YA|U|1438
6OJ2|1|YA|A|1439
6OJ2|1|YA|G|1440
*
6OJ2|1|YA|C|1551
6OJ2|1|YA|G|1552
6OJ2|1|YA|A|1553
6OJ2|1|YA|A|1554
6OJ2|1|YA|G|1555

Current chains

Chain YA

23S rRNA

Nearby chains