IL_6OJ2_346
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGUGGCUACCUGCGAUAAGC*GAUGU
- Length
- 26 nucleotides
- Bulged bases
- 6OJ2|1|RA|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OJ2_346 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.2494
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6OJ2|1|RA|A|56
6OJ2|1|RA|C|57
6OJ2|1|RA|G|58
6OJ2|1|RA|U|59
6OJ2|1|RA|G|60
6OJ2|1|RA|G|61
6OJ2|1|RA|C|62
6OJ2|1|RA|U|63
6OJ2|1|RA|A|64
6OJ2|1|RA|C|65
6OJ2|1|RA|C|66
6OJ2|1|RA|U|67
6OJ2|1|RA|G|68
6OJ2|1|RA|C|69
6OJ2|1|RA|G|70
6OJ2|1|RA|A|71
6OJ2|1|RA|U|72
6OJ2|1|RA|A|73
6OJ2|1|RA|A|74
6OJ2|1|RA|G|75
6OJ2|1|RA|C|76
*
6OJ2|1|RA|G|110
6OJ2|1|RA|A|111
6OJ2|1|RA|U|112
6OJ2|1|RA|G|113
6OJ2|1|RA|U|114
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R2
- 50S ribosomal protein L29
- Chain R7
- 50S ribosomal protein L34
- Chain RX
- 50S ribosomal protein L23
Coloring options: