IL_6OJ2_348

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUA*UGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_348 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3213

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6OJ2|1|RA|G|869
6OJ2|1|RA|A|870
6OJ2|1|RA|U|871
6OJ2|1|RA|A|872
*
6OJ2|1|RA|U|905
6OJ2|1|RA|G|906
6OJ2|1|RA|U|907
6OJ2|1|RA|C|908

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Transfer RNA; tRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25