IL_6OKK_010
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6OKK|1|A|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_010 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1124
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OKK|1|A|G|141
6OKK|1|A|G|142
6OKK|1|A|A|143
6OKK|1|A|U|144
6OKK|1|A|A|145
6OKK|1|A|A|146
6OKK|1|A|C|147
*
6OKK|1|A|G|163
6OKK|1|A|C|164
6OKK|1|A|U|165
6OKK|1|A|A|166
6OKK|1|A|A|167
6OKK|1|A|U|168
6OKK|1|A|A|169
6OKK|1|A|C|170
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S6
- Chain L
- 40S ribosomal protein S8
- Chain a
- 40S ribosomal protein S24
Coloring options: