IL_6OKK_022
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_022 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.0994
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6OKK|1|A|A|557
6OKK|1|A|G|558
6OKK|1|A|G|559
6OKK|1|A|G|560
6OKK|1|A|C|561
6OKK|1|A|A|562
6OKK|1|A|A|563
6OKK|1|A|G|564
*
6OKK|1|A|C|594
6OKK|1|A|U|595
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain G
- 40S ribosomal protein S5
- Chain f
- 40S ribosomal protein S30
Coloring options: