IL_6OKK_030
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAAAUU*ACUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_030 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3833
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OKK|1|A|G|801
6OKK|1|A|A|802
6OKK|1|A|G|803
6OKK|1|A|U|804
6OKK|1|A|A|805
6OKK|1|A|A|806
6OKK|1|A|A|807
6OKK|1|A|U|808
6OKK|1|A|U|809
*
6OKK|1|A|A|854
6OKK|1|A|C|855
6OKK|1|A|U|856
6OKK|1|A|A|857
6OKK|1|A|U|858
6OKK|1|A|A|859
6OKK|1|A|G|860
6OKK|1|A|C|861
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain F
- 40S ribosomal protein S4
- Chain K
- 40S ribosomal protein S15A
- Chain V
- 40S ribosomal protein S11
Coloring options: