IL_6OKK_040

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGG*UAA

Length

7 nucleotides

Bulged bases

6OKK|1|A|G|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_040 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.1707

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6OKK|1|A|U|943
6OKK|1|A|G|944
6OKK|1|A|G|945
6OKK|1|A|G|946
*
6OKK|1|A|U|1020
6OKK|1|A|A|1021
6OKK|1|A|A|1022

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain U

40S ribosomal protein S15

Chain c

40S ribosomal protein S26