IL_6OKK_047
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAGUAUU*AGAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_047 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1117
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|C|1212
6OKK|1|A|G|1213
6OKK|1|A|A|1214
6OKK|1|A|G|1215
6OKK|1|A|U|1216
6OKK|1|A|A|1217
6OKK|1|A|U|1218
6OKK|1|A|U|1219
*
6OKK|1|A|A|1230
6OKK|1|A|G|1231
6OKK|1|A|A|1232
6OKK|1|A|A|1233
6OKK|1|A|A|1234
6OKK|1|A|G|1235
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S23
Coloring options: