IL_6OKK_065

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_065 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1415

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OKK|1|A|G|1935
6OKK|1|A|C|1936
6OKK|1|A|C|1937
6OKK|1|A|C|1938
*
6OKK|1|A|G|2052
6OKK|1|A|U|2053
6OKK|1|A|A|2054
6OKK|1|A|A|2055
6OKK|1|A|C|2056

Current chains

Chain A

18S ribosomal RNA

Nearby chains